Understanding the origin of Sub-Saharan biodiversity requires knowing the history of the region's paleo-ecosystems. As water is essential for sustaining of life, the evolving geometry of river basins often have influence on local speciation. With this in mind, we analyse drainage patterns in Central and East Africa. Evidence from marine fossils suggests the Congo Basin was submerged for much of the Cretaceous, and after being uplifted drained eastwards through a paleo-Congo river towards the Indian Ocean. Two remnant peneplains in the Congo Basin are interpreted as evidence that this basin was tectonically stable on at least two occasions in the past. The lower peneplain is interpreted as the base level of the drainage pattern that had its outlet in Tanzania, at the present Rufiji Delta that was once over 500 km wide. The Luangwa, today a tributary of the Zambezi river, was a part of this drainage network. This pattern was subsequently disrupted by uplift associated with the East African Rifting in the Oligocene-Eocene (30-40 Ma). The resulting landlocked system was captured in the Miocene (5-15 Ma) by short rivers draining into the Atlantic Ocean, producing the drainage pattern of Central Africa seen today. Keywords: River basins of Central Africa, Paleo-drainage, Biodiversity, Geomorphology, Tectonics.