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We counted waterbirds along a fixed route in the panhandle of the Okavango River in Mahango Game Reserve in the dry season during two seven-year periods (1991–1997 and 2000–2006). Palearctic migrants represented by 11 species in 1991–1997 and nine species in 2000–2006 together composed only a small percentage of all birds recorded in both periods. The two most numerous foraging guilds were birds foraging in shallow water and those foraging in deep water. The former guild was more numerous in 2000–2006, while the latter guild was more numerous in 1991–1997.

The Okavango River system, about 480 kms of which constitutes the border between Namibia and Angola, has previously been largely neglected in the annual wetland water-bird counts programme conducted throughout Namibia. The exceptions have been the Mahango Game Reserve and a section of the river at Shamvura Camp where voluntary wetland water-bird counts have however been conducted over a consecutive period of 15 years and 11 years respectively. The remainder of the river had been left uncounted until 2012.

Human and, increasingly, elephant pressure on Namibia's wetlands and riparian belts are a major cause of conservation concern. Many wetland birds are listed in Namibia's Red Data Book (Simmons & Brown in prep) because of population declines caused by the degradation and destruction of wetland habitats, and because of high levels of disturbance. Good information on the status of major wetlands and their avifauna is important for their conservation management. Birds provide one of the best indicators of wetland health.

This study has provided baseline data on crocodile numbers from aerial and spotlight counts. These data can be used with the results of future counts to determine population trends. The census has also provided information on their distribution of crocodiles in the Kavango and Caprivi regions. And third, it has resulted in the first population estimate for crocodiles in the north-east wetlands of Namibia.